ekellbuch / cocaim

Compression and denoising of Functional Imaging movies

Cocaim

Compression and denoising of Calcium and other functional Imaging recordings

Dataset from https://github.com/simonsfoundation/CaImAn

Comments:

1. Runs in python3
2. We assume the data is motion corrected and detrended by your method of choice.

Dependencies

Dependencies:

1. TREFIDE
2. CVXPY
3. CVXOPT