ehbeam

neuro-knowledge-engine

Codebase for "A data-driven framework for mapping domains of human neurobiology"

nke-viewer

Interactive viewer for a data-driven neuroscience ontology

articles2domains

Pipeline for preprocessing neuroimaging article texts and, with pre-aggregated coordinate data, mapping to domains of brain functino

mind2brain

Predict brain activation patterns from text-based features across the human neuroimaging literature

nke-emr-pilot

Application of the neuroscience knowledge engine (NKE) to a corpus of medical records

bayesian-synth

context2brain

Neural network classifiers predict neuroimaging coordinates from article text features, including LSTM encodings of word embeddings

ehbeam.github.io

nke-bias

Evaluation of aspirational interpretation, sales pitch, and concentration of power biases with respect to the data-driven framework

nke-phenotyper

Knowledge frameworks applied to phenotype medical records and predict clinical outcomes

examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

learning2learn

nke-cerebellum

Version of the neuroscience knowledge engine with a full cerebellar parcellation

nke-cerebellum-viewer

Site for viewing neuroscience knowledge engine results with the full cerebellar parcellation

ontologies2lexicon

Curates and preprocesses terms for mental function from publicly available ontologies

scanlab

Neuroimaging lab for The Nervous System (NBIO 206)

text2brain

Deep learning approach to predicting neuroimaging data from article texts

tms-eeg

Interactive viewer for longitudinal TMS-EEG data

trauma-nlp

Natural language processing to score trauma types in free text