egillax

PatientLevelPrediction

An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

torchComparison

Andromeda

AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.

Apollo

[Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)

ApolloR

[Under development] An R package with functionality to help fit large models on data in the CDM

arrow

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

arulesSequences

:exclamation: This is a read-only mirror of the CRAN R package repository. arulesSequences — Mining Frequent Sequences

AssociationRuleMining

An R package that implements association rule mining and frequent pattern mining against the OMOP-CDM

BigKnn

An R package implementing a large scale k-nearest neighbor classifier using the Lucene search engine

boruta_py

Python implementations of the Boruta all-relevant feature selection method.

cehr-bert

CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks

computational-reproducibility-in-r

config

config files

connector-x

Fastest library to load data from DB to DataFrames in Rust and Python

Cyclops

Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

DatabaseConnector

An R package for connecting to databases using JDBC.

deep_LFP

DeepPatientLevelPrediction

An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.

egillax

My personal repo

FeatureExtraction

An R package for generating features (covariates) for a cohort using data in the Common Data Model.

IterativeHardThresholding

omop-learn

ParallelLogger

An R package for easy parallel computing, logging, and function call automation.

PredictionPandemicPerformance

SqlRender

This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

tabnet

An R implementation of TabNet

torch

R Interface to Torch

torchoptx

C++ based optimizers for torch

Tutorial-Hades

Materials used for tutorials on HADES

zip

Platform independent zip compression via miniz