eead-csic-compbio's repositories
get_homologues
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
chloroplast_assembly_protocol
A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads
metagenome_Pfam_score
Protocol for finding informative protein families and then using them to score metagenomic sets.
allopolyploids
PhyloSD: Phylogenomic Subgenome Detection pipeline
scripting_linux_shell
A collection of recipes to start scripting in the linux command line
bioinformatics
Bioinformatics resources and best-practices for beginners
barley-agroclimatic-association
Association with high-resolution climate data reveals selection footprints in genomes of barley landraces across the Iberian peninsula
bioinformatica_estructural
Este material presenta algunos algoritmos para el estudio de la estructura molecular de proteínas y ácidos nucleicos. Introduce problemas (y estrategias para resolverlos) desde la estructura primaria a la cuaternaria. A lo largo hay referencias a artículos y ejercicios que a veces requieren conocimientos de programación.
coexpression_motif_discovery
Discovering cis-regulatory motifs in proximal promoters of plants in RSAT::Plants
primers4clades
Automated pipeline for the design of PCR primers for cross-species amplification of novel sequences
vcf-filter
Java tool to filter an input VCF file a la carte, based on HTSJDK and Apache commons CLI.
split_pairs
split_pairs.pl is a simple and efficient utility for pre-processing NGS sequence reads in FASTQ and FASTA formats, suited particularly for the task of sorting pair end reads and for modifying their headers with Perl-style regular expressions
barley_pangenes
Clusters of gene models or alleles found in barley assemblies in a similar genomic location
bioconda-recipes
Conda recipes for the bioconda channel.
biostats_bioinfo
Source code of teaching material for the course Biostatistics and Bioinformatics
eead-csic-compbio.github.io
Website source of the Computational & Structural Biology group @EEAD-CSIC
footprintDBclient
Query footprintDB from the command-line
methods_biostats_bioinfo
Sample data and source code used in the course "Methods in biostatistics and bioinformatics"
phg_v2
PHG version 2
plantoquimica
Paseo bioquímico y genómico en el jardín botánico
prunusmap_web
This is the web interface of prunusmap application, which uses the barleymap search engine
subopt-kaks
Suboptimal alignments and Ka, Ks calculations
vcf2alignment
Protocol to produce multiple sequence alignments out of VCF files which can be used for phylogenetic tree construction.