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MegaPath-Nano

MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data

Wheeler_Graph_Toolkit

🔎 wheeler graph recognition algorithm, visualization and generation

ClusterV

ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data

ONT-TB-NF

Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.

tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.

Best-websites-a-programmer-should-visit

:link: Some useful websites for programmers.

coding-interview-university

A complete computer science study plan to become a software engineer.

tech-interview-handbook

💯 Curated coding interview preparation materials for busy software engineers

system-design-primer

Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

how-web-works

What happens behind the scenes when we type www.google.com in a browser?

awesome-interview-questions

:octocat: A curated awesome list of lists of interview questions. Feel free to contribute! :mortar_board:

ML-From-Scratch

Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep learning.

PsiCLASS_paper

The scripts and commands used in PsiCLASS manuscript

Alubaster

Detection of novel Alu exonization events

Jutils

Visualization toolkit for differential splicing events

PsiCLASS

Simultaneous multi-sample transcript assembler for RNA-seq data

TRUST4

TCR and BCR assembly from RNA-seq data

JULiP

Intron selection and differential splicing from RNA-seq data collections

MntJULiP

Comprehensive and scalable differential splicing analyses

duet

SNP-Assisted SV Calling and Phasing Using ONT

Clair3-Trio

Clair3-Trio: variant calling in trio using Nanopore long-reads

a-picture-is-worth-a-1000-words

I am trying to describe complex matters in simple doodles!

MegaPath

MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data

wheatmap

Complex Layout of Grid Graphics Made Simple

sesame

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

transvar

TransVar - multiway annotator for precision medicine

nntrainer

NNtrainer is Software Framework for Training Neural Network Models on Devices.

Grokking-System-Design

Systems design is the process of defining the architecture, modules, interfaces, and data for a system to satisfy specified requirements. Systems design could be seen as the application of systems theory to product development.

CPG

Building a Chinese pan-genome of 486 individuals