educhicano's repositories
course20
Deep Learning for Coders, 2020, the website
msiPL
Python Implementation of the msiPL by Abdelmoula et al.
tools-galaxyp
Galaxy Tool Shed repositories maintained and developed by the GalaxyP community
elabftw
:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
MSExample
An example R package for mass spectrometry
MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
MayInstitute2020-IntermediateR
May Institute 2020 Online - Intermediate R Crash Course
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
datasharing
The Leek group guide to data sharing
Machine-Learning-Tutorials
machine learning and deep learning tutorials, articles and other resources
qupath
QuPath - Open Source Digital Pathology
handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
IDBacApp
A MALDI Mass Spectrometry Bioinformatics Platform
docker-galaxy-stable
:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
grine_demo
Pre-configurated version of Grine to reproduce the results for the following publication:
docker-galaxy-msi
Galaxy docker container for mass spectrometry imaging
MetaboAnalyst_Docker
Docker for MetaboAnalyst 4.0
rMSI
R MSI Tools
rMSIproc
rMSI processing methods using C++ Boost library
TeachingMaterial
Various teaching material
cytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.js
data_tools
Collection of Python functions and classes designed to make data scientists' life easier.
regToolboxMSRC
Registration toolbox for microscopy images integrated in imaging mass spectrometry experiments
codenvy
Codenvy
pyimzML
A parser to read .imzML files with python
Cardinal
Mass spectrometry imaging tools
PACOM
PACOM (Proteomics Assay COMparator) is a Java stand alone tool for visualize and compare large proteomics datasets