edraizen

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

plmc

Undirected graphical models of sequence families by pseudolikelihood

SingularityTorch

3d-unet

Tensorflow, Pytorch, and Chainer implementations of 3D UNet

3DUnetCNN

Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

captum

Model interpretability and understanding for PyTorch

edraizen.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics

HistoneDB

Browse all histone sequences by histone varaints

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

expVAE

Visually Explainable VAE

HMMPileUp

Run HMMER and UCSC-SAM model mixtures, saving the results into a pile up

hydra

Hydra is a framework for elegantly configuring complex applications

icn3d

Client-side structure viewer

keras

Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.

keras_demo

LAJC-Wage-Theft-Data

masif-dockerfile

MinkowskiEngine

Minkowski Engine is an auto-diff neural network library for high-dimensional sparse tensors

modern-resume-theme

A modern static resume template and theme. Powered by Jekyll and GitHub pages.

old_personal_site

Personal Site and CV

pdb-tools

Set of utility scripts to manipulate PDB files

prodigy

Repository containing various scripts to predict the binding affinity of protein-protein complexes from structure

Pytorch-LRP

Basic LRP implementation in PyTorch

RFdiffusion

Code for running RFdiffusion

Singularity

SparseConvNet

Submanifold sparse convolutional networks

Structure_Visualization

1-, 2-, and 3-D visualizations of SNPs and Protein Interaction Data

toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

toil-gpu

tqdm

A fast, extensible progress bar for Python and CLI