ecwooten

linamp

auto_barcode

Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files

organicmaps

🍃 Organic Maps is a free Android & iOS offline maps app for travelers, tourists, hikers, and cyclists. It uses crowd-sourced OpenStreetMap data and is developed with love by MapsWithMe (MapsMe) founders and our community. No ads, no tracking, no data collection, no crapware. Please donate to support the development!

phanpy

A minimalistic opinionated Mastodon web client

Keka

The macOS & iOS file archiver

BetterDisplay

Unlock your displays on your Mac! Flexible HiDPI scaling, XDR/HDR extra brightness, virtual screens, DDC control, extra dimming, PIP/streaming, EDID override and lots more!

awesome-bookmarklets

🔖 Awesome collection of helpful bookmarklets

PyWGCNA

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

python-mastery

Advanced Python Mastery (course by @dabeaz)

OpenWorm

Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

GRETTA

GRETTA (Genetic inteRaction and EssenTiality neTwork mApper): An R package for mapping genetic interaction and essentiality networks

Jackett

API Support for your favorite torrent trackers

the-sourdough-framework

Open source book dedicated to helping you to make the best possible sourdough bread at home.

WaveFox

Firefox CSS Theme/Style for manual customization

streammd

Single-pass probabilistic duplicate marking of alignments with a Bloom filter.

viprs

Variational Inference of Polygenic Risk Scores

typst

A new markup-based typesetting system that is powerful and easy to learn.

miller

Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON

Sloth

Mac app that shows all open files, directories, sockets, pipes and devices in use by all running processes. Nice GUI for lsof.

thorium-reader

A cross platform desktop reading app, based on the Readium Desktop toolkit

docs

This repository builds the documentation for hello

Revana

Revana (REgulatory Variant ANAlysis) is a user friendly tool, that can aggregate and visually represent regulatory variants from cancer genomes in a gene-centric manner. It requires whole genome (WGS) and RNA sequencing (RNA-Seq) data of a cohort of tumor samples and creates interactive HTML reports summarizing the most important regulatory events.

alphafold

Open source code for AlphaFold.

biohazard-tools

Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]

MBTA_BOARD

diffusionbee-stable-diffusion-ui

Diffusion Bee is the easiest way to run Stable Diffusion locally on your M1 Mac. Comes with a one-click installer. No dependencies or technical knowledge needed.

effectsize

A Python package for computing effect sizes

min-dalle

min(DALL·E) is a fast, minimal port of DALL·E Mini to PyTorch

Azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

NetSeekR

A networks analysis pipeline for RNASeq time series data