econnolly7

scRNA_analysis_RT_antiPDL1

Radiation and anti-PDL1 synergize by stimulating a stem-like T cell population in the tumor-draining lymph node

scRNAseq-analysis

CITE-seq

Basic processing and analysis for CITE-seq data

Cell-cell-communication

cell-cell communication for scRNA-seq

DEGAS

DEGAS is an R package that can be used to prioritize cells in relation to disease.

COVIDPBMC

Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection

scRNA-seq

covid19-time-resolved

This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, Andrew J. Martins, William W. Lau, Nicholas Rachmaninoff, ..., John S. Tsang. "Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19" Cell (2021), In press.

crestree

Neural Crest Fate Decisions