EcoHealth Alliance's repositories
awesome-parasite
A curated list of host-parasite information
container-template
Containerised R workflow template
pubcrawler
PubCrawler uses the EpiTator framework (known at time of writing as Annie) to resolve toponyms in the PubMed Central Open Access Subset. It was used to create the estimate of reporting bias in the paper "Global hotspots and correlates of emerging zoonotic diseases".
amr-analysis
Global patterns and correlates in the emergence of antimicrobial resistance in humans
eha-ma-handbook
EcoHealth Alliance Modeling & Analytics Handbook
amphibian_trade
Documenting amphibian trade into the United States
containerTemplateUtils
A set of utility functions for working with the container-template-repo template
ecohealthalliance.r-universe.dev
An R-Universe for EcoHealth Alliance Packages
eh-server-workflow-run
Outlines how you can run various analytic workflows on EHA infrastructure
targets-mermaid-test
Test for Target Version and Mermaid Rendering Issues
WABNet-spatial
Code used to produce figures in final report for WABNet project
gheri_eucom
Repo for FY'19 GHERI EUCOM project mapping ecological factors that my play a role in EID emergence and spread
bat_viral_detection_reproduction
Investigating reproductive effects on viral detection in bats
building-blocks-of-reproducibility
A series of presentations on creating reproducible workflows
ehallm
What the Package Does (Title Case)
mclustAddonsEHA
A customized fork of mclustAddons
mclustEHA
A Customized Fork of mclust
module-system-llama
Setting access for user to run llama.cpp models for their work as a module system
ohcleandat
One Health Data Cleaning and Quality Checking Package
open-rvfcast
Wellcome Open RVFCast project repository
RPostgres
Temporary fork for testing Dolt/Doltgres compatibility
RVF_SIR_Model
Repository of code to simulate 34-years of RVFV transmission at a single pan in central South Africa.
sabrenetfunctions
Package for some functions for sabrenet data download, cleaning, summarizing, etc used across sabrenet repositories
slurm-containerized-hpc-environment
The goal of this project is to outline the strategies for integrating Simple Linux Utility for Resource Management(SLURM) into our existing High-Performance Computing(HPC) platform.