Erick Cobos (ecobost)

ecobost

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Company:@cajal @atlab

Location:Tubingen, Germany

Twitter:@ecobost

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Erick Cobos's repositories

cnn4brca

Using Convolutional Neural Networks (CNN) for Semantic Segmentation of Breast Cancer Lesions (BRCA). Master's thesis

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brain2sent

Mapping fMRI brain volumes to a joint low-dimensional space to generate descriptions of the images the subject is seeing.

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featurevis

Visualize features cells are responsive to via gradient ascent.

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iRobot_cpp_interface

C++ interface to control the Roomba iRobot Create through a serial port. Implemented for Windows (tested in Windows 10) and Unix (tested in Ubuntu 14.04).

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dermosxai

Explainable methods for medical imaging datasets.

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ARDrone_cpp_interface

C++ interface to control the Parrot ARDrone v1 through a Wi-Fi connection. Implemented for Unix (tested in Ubuntu 14.04).

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bl3d

Cell segmentation in 3D GCaMP structural recordings

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pipeline

Schemata and libraries for neuroscientific data

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attorch

PyTorch Utilities

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CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

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commons

DataJoint schemas for neuroscience data

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gpu-deploy

Fabric library for Docker GPU deployment

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miniCompiler

Compiler for a C-like language. School project in Haskell done for my Programming Languages class (December 2012)

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miniDBMS

Database Management System. School project for my Programming Studio Class (December 2012). Compiles SQL DDL and DML, creates and modifies a database in working memory and writes the database to files when done.

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neuro_data

Neuro Datasets for System Identification

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OOCompiler

Compiler for a Java-like object-oriented language. School project for Compiler Construction class (December 2013).

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pipecontrol

Website for interactions with pipeline.

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scanreader-matlab

Matlab TIFF Stack Reader for ScanImage 5 scans (including multiROI).

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statneuro2

Using real spiking data to compute information measures and decode movement from data. Data courtesy of Prof. J. M. Carmena, University of California, Berkeley.

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topicNeuro

Apply topic models to neuroscientific literature. For copyright issues some scripts are not included. These are not intended to be used for commercial purposes.

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VRPTec

Solves the vehicle routing problem with different search heuristics and algorithms. Please ask for authorization if you plan to use for commercial purposes.

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