Ilya Shamovsky's repositories
arc-theme
A flat theme with transparent elements (actively maintained fork)
bash_kernel
A bash kernel for IPython
biodata
A short workshop for my labmates on working with genomic data
FAST-iCLIP
Fully Automated and Standardized (FAST) iCLIP analysis pipeline.
IS-032
ChIP-Seq analyses for IS-032 NextSeq run
jupyter-themer
Apply custom CSS styling to your jupyter notebooks
jupyterlab-theme-solarized-light
JupyterLab Theme Solarized Light
keds
Python pipeline for SHAPE-SEQ data analysis
labtunnel
Manage ssh tunnels with systemd. Most useful when you neet to maintain an always-up connection to a lab/work computer.
NET_analysis
Analysis scripts for NET-Seq
NGS-cookiecutter
A template for NGS projects
nlabpy
Genomic data parsing and visualization scripts
nlabseq
Scripts and utilities to initialize Jupyter notebook based templates for NGS data analysis.
paper-gtk-theme
Official Paper theme source repository
plotnine
A grammar of graphics for Python
poretools
a toolkit for working with Oxford nanopore data
pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
PyClonal
A Jupyter Notebook to analyze T-cell Receptor Sequencing
pyRNAfold
An exploratory project to implement RNAtips algorithm using pandas
RNAcapture
Analysis scripts for lnrCXCR4 lncRNA paper
rpoS
Scripts for rpoS paper
the-littlest-jupyterhub
Simple JupyterHub distribution for 1-100 users on a single server
XR-Seq-Analysis
Python codes to analyze XR-seq data