eberrigan

datachain

AI-dataframe to enrich, transform and analyze data from cloud storages for ML training and LLM apps

spyglass

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

jupyter-ai

A generative AI extension for JupyterLab

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

genv

GPU environment and cluster management with LLM support

github_actions_tutorial

github-education-teacher-training-eberrigan

github-education-teacher-training-eberrigan created by GitHub Classroom

skeleton

A generic project skeleton for Python projects.

conda_packages

ethome

Tools for machine learning of animal behavior

movement

Python tools for analysing body movements across space and time

actions

Re-usable GitHub Action scripts

git-lfs

Git extension for versioning large files

awesome-jax

JAX - A curated list of resources https://github.com/google/jax

aind-data-schema

A library that defines AIND data schema and validates JSON.

ndx-pose

NWB extension to store pose estimation data

ndx-pose

NWB extension to store pose estimation data

RhizoVisionImager

Application to control multiple Basler vision cameras that is optimized for plant phenotyping (open source from Root Phenomics Lab)

bloom-desktop-pilot

Trying to interface with a camera and DAQ from an electron app

notebooks

Examples and tutorials on using SOTA computer vision models and techniques. Learn everything from old-school ResNet, through YOLO and object-detection transformers like DETR, to the latest models like Grounding DINO and SAM.

leap_rigs

Code for running experiments on the LEAP rigs.

Berrigan_et_al_sleap-roots

Code for figures and analyses in Berrigan et al.

ggPlantmap

extrinsic2pyramid

Visualize Camera's Pose Using Extrinsic Parameter by Plotting Pyramid Model on 3D Space

MaskDINO

[CVPR 2023] Official implementation of the paper "Mask DINO: Towards A Unified Transformer-based Framework for Object Detection and Segmentation"

open-interpreter

A natural language interface for computers

umap

Uniform Manifold Approximation and Projection

supervision

We write your reusable computer vision tools. 💜

root_painter

RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation

plantit