Samir B. Amin's repositories
lanyon-plus
Based on lanyon - A content-first, sliding sidebar theme for Jekyll. Demo at
forked_ChromDiff
Forked code of ChromDiff program as described in Yen and Kellis, Nature Communications 2015. Official code at
pcawg14_htseq
PCAWG-14 htseq RNAseq analysis pipeline
docker_for_genomics
Forked from GenomicParisCentre/dockerfiles
docker_for_pcawg14_htseq
docker build instructions for docker image: dyndna/pcawg14_htseq:0.9.2
forked_FunSeq2
A flexible framework to annotate and prioritize cancer somatic mutations.
forked_gbib
An install script for local install of UCSC Genome Browser; forked from https://github.com/maximilianh/browserInstall
forked_multipart
Use cURL to download a file in multiple parts simulteneously, Source:
forked_singularity
Fork from Singularity: Application containers for Linux
forked_slackr
:hash: A package to send webhook API messages to Slack.com channels/users from R. Original source at
jekyllthemes
A directory of the best-looking themes for Jekyll blogs
MutationalPatterns
R package for extracting and visualizing mutational patterns in base substitution catalogues