dylanwal / well_plate

well plates

Well Plate (well_plate)

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Makes nice visualizations of well plates!

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Installation

pip install well_plate

Dependencies

numpy

pandas

plotly

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Options

• Well numbers

  • 6
  • 12
  • 24
  • 96
  • 384
  • To add more see well_plate/config.py

• Well shape

  • 'circle'
  • 'rect' (square)

• Add data

  • use wp.add_data(); pass in a pd.Series with the index corresponding to well plate index (eg. "A1", "E4", ...)

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Example

Basic example

    import well_plate

    wp = well_plate.WellPlate(24)
    wp.plot()

Change well size

    import well_plate

    wp = well_plate.WellPlate(96, "rect")
    wp.plot()

Add data

    import pandas as pd    
    import well_plate

    wp = well_plate.WellPlate(384, "rect")
    
    df = pd.read_csv("example1_data.csv", index_col=0)
    wp.add_data(df["mw_n"])
    
    wp.plot(key="mw_n")
    wp.heatmap(key="mw_n")