dwinter

pafr

Read, manipulate and visualize 'Pairwise mApping Format' data in R

repeatR

read and analyse RepeatMasker output

genome_factory

scripts and recipies for working on Epichloe genomes

accuMUlate

code for calling mutatons from MA lines

kakapo_aspergillosis

Working directory for analysis of kākāpō _Aspergillus_ isolates

pafr-demo

A repository with code to demonstrate complete analyses using pafr and minimap2

2019-iEvoBio

247.782

Special topic in computational biology

bedtools2

bedtools - the swiss army knife for genome arithmetic

computing-for-biologists

CyclicPeptidedNdS

dwinter

dwinter.info

Personal academic website

fl1_genome_scripts

Scripts and analysis utils to support a manuscript describing the Fl1 genome

gene2product

Curated list of gene names and product descriptions that pass NCBI genome submission rules.

hyliter

R package to connect HyLiTE output to the DeSeq2 differential gene expression software

LoReAn

Long Reads Annotation pipeline

mollusc_worshop_example

Working directory to demonstratea exploratory analyses on a GBS dataset

ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

OrthologScripts

Master code for orthology differentiation

Paga_annotation

Analyses associated with the annotation of the P. agathidicida genome

reffectorP

automat requests to the effectorP web site

shell-genomics

so-simple-theme

A simple Jekyll theme for words and pictures.

SpeciesTree

R Code for species tree 25.11.19

tepapar

ToTidy

Code to produce trees and heatmaps for B-tub and all species to be iterable

WhatToExpect

WhatToExpect_demo

wrangling-genomics