dvklopfenstein

DV Klopfenstein, PhD's starred repositories

biomedicalresearch2021

Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research

CC0-1.01300

hardware_introduction

What scientific programmers must know about CPUs and RAM to write fast code.

Language:Julia42400

python-docx

Create and modify Word documents with Python

Language:PythonMIT424800

deep-molecular-optimization

Molecular optimization by capturing chemist’s intuition using the Seq2Seq with attention and the Transformer

Language:PythonApache-2.013900

Drexel-SDP

A code repository for a Drexel Senior Design Project

Language:Objective-C400

judosite

A django-based judo attendance website

Language:JavaScript500

publookup

A python function for looking up Pubmed articles based on the genes that they mention

Language:Python400

flELM

A project to find the source-organism of a flu sequence based on the specificity of functional sites.

Language:Python500

RawBodyBugg

A collection of scripts for managing data from a BodyBugg

Language:Python900

pyMutF

A project to find the mutations relevant to HIV binding events.

Language:Python900

octopus

Bayesian haplotype-based mutation calling

Language:C++MIT29700

practises

Notes on Knocean Practises

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interviews

Everything you need to know to get the job.

Language:JavaMIT6188400

oneliners

Useful bash one-liners for bioinformatics.

180400

wtfpython

What the f*ck Python? 😱

Language:PythonWTFPL3518100

fypo

Fission Yeast Phenotype Ontology

Language:MakefileCC-BY-4.01400

treecut

Find nodes in hierarchical clustering that are statistically significant

Language:Python2800

allhic

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

Language:Jupyter NotebookBSD-3-Clause5700

districtbuilder

DistrictBuilder is web-based, open source software for collaborative redistricting.

Language:TypeScriptApache-2.06200

Early-Vote-2020G

Tracker for 2020 general election early vote (mail and in-person) activity

Language:R10900

tetris

My rendition of the classic tetris for terminal.

Language:C++MIT35700

pdftools

small collection of python scripts for pdf manipulation

Language:PythonMIT9100

awesome-falsehood

😱 Falsehoods Programmers Believe in

CC0-1.02314600

pyfrost

Python bindings for Bifrost with a NetworkX compatible API

Language:PythonBSD-3-Clause2500

coolpuppy

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Language:PythonMIT7200

htguideseq

High Throughput GuideSeq Analysis

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choosealicense.com

A site to provide non-judgmental guidance on choosing a license for your open source project

Language:RubyMIT355900

opensource.guide

📚 Community guides for open source creators

Language:HTMLCC-BY-4.01362800

ascii_plots

Convenience function for quick and dirty data analysis

Language:Python6800

PySyft

Perform data science on data that remains in someone else's server

Language:PythonApache-2.0928800