durrantmm

tidypython

tidypython - A simple python package designed to syntactically mimic the tidyr package in R.

rnaseq_variant_calling_workflow

This is an human RNAseq variant calling workflow, following the GATK pipeline. Also includes ADAR-site elimination.

mustache

A flexible tool to identify mobile genetic elements and their sites of insertions from short-read whole-genome sequencing data.

dnaseq_variant_calling_workflow

ISPeaks

Peak caller for insertion sequences within metagenomic samples.

pytidyverse

A simple python wrapper to easily import packages that were designed to syntactically mimic the R tidyverse

readpy

A simple python package designed to syntactically mimic the readr R package.

2017-05-18-snakemake

AnshulTutorial

ase_read_counting_workflow

Snakemake workflow for removing mapping bias from sequencing data, and then counting the number of reads per allele at loci of interest.

ASETools

bhattlab

This is the code that I developed in the bhatt lab

dada2_snakemake

dplython

dplyr for python

durrantmm.github.io

Matt Durrant's Personal Website

durratools

eagle

Detect environment effects on ASE

eagle2

gatk-rnaseq-variant-calling-workflow

genomic_ase_read_counting_workflow

ISHunter

metaseqml

Classification of sequencing reads

mustache2

mustache_OLD

pipelines

Data processing and analysis pipelines

PPI_RandomForest_Prediction

This repository houses the majority of the resources used for Matt Durrant's 2016 Fall semester project. The focus of this project was to create a random forest machine learning model to predict protein-protein interactions.

Project2_Assembler

Our second project github repository

shiny-omics

VariantManager

A software suite and web plugin to manage variants for various human genomic projects.