duosu's repositories
single-cell-papers-with-code
Papers with code for single cell related papers
MuSiC
Multi-subject Single Cell Deconvolution
SCENICprotocol
A scalable SCENIC workflow for single-cell gene regulatory network analysis
STREAM
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
URD
URD - Reconstruction of Branching Developmental Trajectories
SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
singleCellNet
SingleCellNet: classify single cells across species and platforms
cellrouter
Reconstruction of complex single-cell trajectories using CellRouter
Python
My Python Examples