duolinwang's repositories
MusiteDeep
MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep learning library Keras and Theano backend (the Keras2.0 and Tensorflow backend implementation were also provided under folder MusiteDeep_Keras2.0). At present, MusiteDeep only provides prediction of human phosphorylation sites; however, it also provides customized model training that enables users to train other PTM prediction models by using their own training data sets based on either CPU or GPU.
MusiteDeep_web
This repository contains the stand-alone tool for MusiteDeep server
CapsNet_PTM
CapsNet for Protein Post-translational Modification site prediction.
ACM-BCB-2019-Tutorial
Slides, code, and examples for the Low-dimensional Representation of Biological Sequence Data tutorial at the ACM-BCB 2019 conference
August-2019-consensus-accuracy-update
A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
Basecalling-comparison
A comparison of different Oxford Nanopore basecallers
dragonfly
An open source python library for scalable Bayesian optimisation.
evolocity
Evolutionary velocity with protein language models
google-research
Google Research
Keras-GAN-1
Keras implementations of Generative Adversarial Networks.
keras-transformer
Keras library for building (Universal) Transformers, facilitating BERT and GPT models
keras-transformer-1
Transformer implemented in Keras
memory_profiler
Monitor Memory usage of Python code
ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
vicreg
VICReg official code base