dulunar

scCUTseq

Code and data used for scCUTseq manuscript

scCircle-seq

3ca

Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".

bMDA

mulqueenr.github.io

Working website of on going single-cell projects.

Microsoft-Activation-Scripts

A Windows and Office activator using HWID / Ohook / KMS38 / Online KMS activation methods, with a focus on open-source code and fewer antivirus detections.

HumanBreastCellAtlas

Repository for codes for the HBCA paper

pyPaSWAS

Program for DNA/RNA/protein sequence alignment, read mapping and trimming. Extended python version of PaSWAS, supporting OpenCL and CUDA devices.

Pacasus

Correction of palindromes in long reads from PacBio and Nanopore

Branchiostoma_SNP

Variant calling and PSMC workflows

PMAT

An efficient assembly tool for plant mitochondrial genome

DWGSIM

Whole Genome Simulator for Next-Generation Sequencing

Training-modules

Materials for short, half-day workshops

LactatingMammaryCells

seqan

SeqAn's official repository.

G4-miner

Direct genome-wide identification of G-quadruplex structures by whole-genome resequencing

AnalysisScripts

DeepVariant

Deep Variant as a Nextflow pipeline

senaite.lims

SENAITE Meta Package

free-programming-books-zh_CN

:books: 免费的计算机编程类中文书籍，欢迎投稿

vertebrate_rate

Method used in the study on germline mutation rate estimation in 68 species of vertebrates.

MyChrome

wgs

Whole genome workflows

AYB2

AYB2 -- All Your Base version 2. A base caller for the Illumina platform

warp

WDL Analysis Research Pipelines

WBBC

Westlake BioBank for Chinese pilot project

C-VIEW

This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.

BigBookofR

The biggest collection of R books (and maybe later some other resources too)

ggside

ggplot2 extension allowing for plotting various geometries as side panels using the ggplot2 API

ggfortify

Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.