dudushou

penzai

A JAX research toolkit for building, editing, and visualizing neural networks.

ClairS

ClairS - a deep-learning method for long-read somatic small variant calling

stackview

Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets

styles

中文 CSL 样式

dunovo

Reference-free duplex sequencing pipeline.

deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

polygraph

Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

ddsm

Dirichlet Diffusion Score Model for Biological Sequence Generation.

DNA-Diffusion

🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨

autogen

A programming framework for agentic AI. Discord: https://aka.ms/autogen-dc. Roadmap: https://aka.ms/autogen-roadmap

pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

igblast

Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python

scGPT

LLM-scientific-feedback

Can large language models provide useful feedback on research papers? A large-scale empirical analysis.

marimo

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

XAI-for-bioinformatics

Explainable AI for Bioinformatics

ColabFold

Making Protein folding accessible to all!

SynBP

Design and deep learning of synthetic B- cell-specific promoters

KeepChatGPT

这是一款提高ChatGPT的数据安全能力和效率的插件。并且免费共享大量创新功能，如：自动刷新、保持活跃、数据安全、取消审计、克隆对话、言无不尽、净化页面、展示大屏、拦截跟踪、日新月异、明察秋毫等。让我们的AI体验无比安全、顺畅、丝滑、高效、简洁。

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

awesome-chatgpt-prompts-zh

ChatGPT 中文调教指南。各种场景使用指南。学习怎么让它听你的话。

dash-bio

Open-source bioinformatics components for Dash

gos

A declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.

bamboolib

bamboolib - a GUI for pandas DataFrames

BioGPT

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Basset

Convolutional neural network analysis for predicting DNA sequence activity.