Duarte's repositories
CoNVaDING_reload
Fork of the CoNVaDING software - Copy Number Variation Detection In NGS Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage NGS data
solar_analysis
streamlit app for analysing solar output
clusterFAST
ClusterFAST is a tool for finding translocation in next generation sequencing data
cnvkit-cbsMethod
Copy number variant detection from targeted DNA sequencing
django-bootstrap4
Bootstrap 4 integration with Django.
ensembl
The Ensembl Core Perl API and SQL schema
ensembl-compara
The Ensembl Compara Perl API and SQL schema
ensembl-funcgen
Ensembl Funcgen Perl API and SQL schema
ensembl-rest-docker
This repo contains the code to dockerize a ensembl REST server on your own local machine. It allows the user to specify a different configuration to a locally hosted ensembl database and tweeking of the throtelling settings setup by default by ensembl for their own servers
ensembl-tools
Ensembl tools
ensembl-variation
The Ensembl Variation Perl API and SQL schema
matchclips2
paired end distance, split reads matching, read depth are used to detect and precisely locate structure variations
smash-paper
code for mapping and binning SMASH genomic data