duanjunhyq's repositories
AIV_seeker
AIV_seeker is optimized for detecting and identification of Avian Influenza Virus from metagenomics data.
awesome-nanopore
A curated list of awesome nanopore analysis tools.
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
cidgoh_qc
Workflow for quality check for NGS data
ConFindr
Intra-species bacterial contamination detection
covizu
Rapid analysis and visualization of coronavirus genome variation
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
galaxy-client
Galaxy web api client library
ggfree
ggplot2-style plots with base R graphics
GreaterWMS
This Inventory management system is the currently Ford Asia Pacific after-sales logistics warehousing supply chain process . After I leave Ford , I start this project . In order to help some who need it . OneAPP Type . Support scanner PDA, mobile APP, desktop exe, website as well .
irida-galaxy-deploy
:whale: Deploying IRIDA and Galaxy all in one server/VM using Docker or Terraform
lexmapr_django
Django-powered interface for the LexMapr package.
mag
Assembly and binning of metagenomes
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nanopore-transfer-automation
Performs archiving and transfer of Nanopore sequencing data
pokay
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
ProbeTools
Flexible, user-friendly hybridization probe design for diverse viral taxa
puppet-magic_castle
Puppet Environment repo for Magic Castle - https://github.com/ComputeCanada/magic_castle
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
terraform_openstack_kenyi
Terraform deployment openstack cedar cloud
Trycycler
A tool for generating consensus long-read assemblies for bacterial genomes
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
workshop-r
Workshop • R Programming Foundations for Life Scientists • 5 days