drneavin

drneavin

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drneavin's repositories

DoubletDecon

A tool for removing doublets from single-cell RNA-seq data

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Folder-Structure-Conventions

Folder / directory structure options and naming conventions for software projects

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Monopogen

Single Cell Population Genetics and Association Analysis Tool

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scai

Single Cell Admixture Inference: A toolset for inferring ancestral admixture of the donors of single cell data

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sceQTL-Gen-Consortium-Demultiplexing

Results from testing SNP-based demultiplexing methods on multiple independent data sets.

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scrunchy

R toolkit for the analysis of single-cell functional heterogeneity

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umap

Uniform Manifold Approximation and Projection

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vices

VICES (Verify Intensity Contamination from Estimated Sources) is a program that jointly estimates contamination and its sources in genotyping arrays.

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WG1-pipeline-QC_GoogleCloud

Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done. For Google Cloud Execution

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WG2-pipeline-classification-docs

WG2 documentation website for cell type classification

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