Rashed Karim's repositories
3D-Surface-to-surface-fusion-
ICP and transfer point data scalars between two VTK surfaces
DSI-slice-based
Dice similarity index (DSI) to compute mean dice per slice using MIRTK
EvaluateSegmentation
A program to evaluate the quality of image segmentations.
FANN-neural-network-on-XOR
Barebone MSVC example of using the C++ library for Fast Artificial Neural Network (FANN)
FLTK-barebones
A barebone example of FLTK interface which compiles on MacOS Sierra
Haralick-Feature-Extractor
Haralick Feature Extractor
horos
Horos™ is a free, open source medical image viewer. The goal of the Horos Project is to develop a fully functional, 64-bit medical image viewer for OS X. Horos is based upon OsiriX and other open source medical imaging libraries. Horos is made freely available under the GNU Lesser General Public License, Version 3 (LGPL-3.0). Horos is linked against the Grok JPEG 2000 library, for fast viewing of JPEG 2000 images. This library is licensed under the terms of the GNU Affero General Public License.
Image-Crop
Crop a binary image mask in 3D
ImageRescaler
Rescale routines for 3D images
Invert-transform-then-ICP
Inverts a 4x4 landmark transformation, applies to VTK polydata and then performs affine ICP. Scalars are transferred
Left-atrial-wall-from-CT
Segmentation of atrial wall using iterative dilation and intensity thresholding
markdown-cheatsheet
Markdown Cheatsheet for Github Readme.md
MaskedVolume
Outputs the total volume under a binary mask in a 3D image
Mesh-polygon-to-mesh-vertex-data-transfer
Transferring and converting a VTK surface containing cell scalars to point scalars
Negate-Mask
Negate a binary mask
Neighbouring-vertices-surface-mesh
Outputs point scalar values at regions indicated by a mask
Probabilistic-data-atlas-creator
Creating an atlas by averaging point scalars from VTK meshes
Pseudo-random-data-generator-for-surface-meshes
Assigns a random point data scalar to VTK 2D meshes
Receiver-Operator-Curves-ROC-
ROC curves for voxel binary classification
Scar-Transmurality-Phantom-Validation
Image data accompanying our paper on for scar transmurality measurement from MRI
SciKitToolBox
Lots of tools for playing with data
Sensitivity-and-Specificity
Sensitivity and Specificity Analysis on 3D NIFTII data
Smooth-data-surface-mesh
Smooth point data scalars on a VTK mesh
Watershed-algorithm-post-processor
Post-processing for marker-controlled Watershed segmentation using MIRTK
watershed2wall
Post-processing image morpholoigical tools for extracting atrial wall after Watershed segmentation