John E Smith III's repositories
ThreeDRNAseq
A shiny App for differential expression and differential alternative splicing analysis
20170225_Solutions
Solutions for the Software Carpentry Workshop on 2017-02-25
CapstoneProject
Software Carpentry
colonCancerWGBS
Six paired tumor-normal WGBS samples from Ziller et al. (2013) PMID: 23925113. Only chr22.
datasciencecoursera
The Data Scientist's Toolbox from the Data Science Series at Coursera.org
datasharing
The Leek group guide to data sharing
dc_2016_04
Data Carpentry materials for Jackson Labs workshop
Diff_signal_pred
Scripts in "Differential Analysis of Chromatin Accessibility and Histone Modifications for Predicting Mouse Developmental Enhancers, Fu et al."
GeneticExpression-analysis
Analysis of a Dataset (effects of insulin in skeletal muscle) in order to learn more about Pandas, Mathplotlib, Numpy, Sklearn libraries as well as ML concepts
hello-world
learning to use github
hello-world2
(Re)Learning to use GitHub
labs
Scripts for HarvardX courses: PH525x
MuscleOptimizer
OpenSim plugin + Matlab toolbox to map muscles' operating range to a reference model
Mutation-analysis
This is intended to fill out data that was mined from the dmd.nl database on Muscular Dystrophy with relevant physical characteristics and assess any trends in physical characteristics and the likelihood of being a disease causing mutation.
paper-now
Create, edit and display a journal article, entirely in GitHub
proteomecommons-tranche
Automatically exported from code.google.com/p/proteomecommons-tranche
scw_shell_lesson
Feb25-26,2017 course
SoftwareCarpentry
Course Feb25-26
tcgaMethylationSubset
A subset of the DNA mehtylation data in TCGA