Joseph Barker's repositories
snakemake-gridengine
Snakemake profile for the (Sun) Grid Engine queueing system
arcdocs.github.io
ARC Documentation Jupyter Book repository
atomsk-feedstock
A conda-smithy repository for atomsk.
bde
Basic Development Environment - a set of foundational C++ libraries used at Bloomberg.
conda-forge.github.io
The conda-forge website.
jams-workflows
Workflow scripts for JAMS
libkdtree
libkdtree++ mirror
otter-grader
Scalable autograder for Python and Jupyter Notebooks
paper-asreview
Scripts for paper: 'ASReview: Open Source Software for Efficient and Transparent Active Learning for Systematic Reviews'
PyCrystalField
Code to calculate the crystal field Hamiltonian of magnetic ions.
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
slurm
Cookiecutter for snakemake slurm profile
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
snakemake-jams-magnon-spectrum
Snakemake workflow for calculating a magnon spectrum with JAMS
snakemake-jams-thermodynamics
Snakemake workflow for calculating magnetisation, susceptibility, energy and specific heat
sshuttle
Transparent proxy server that works as a poor man's VPN. Forwards over ssh. Doesn't require admin. Works with Linux and MacOS. Supports DNS tunneling.
starter
Take the monotony out of macOS system setup.