dphansti / mango

chia pet analysis software

dphansti/mango Issues

Error in density.default(log10distances)
Closed 5 years ago1
Error : read names of PET ends do not match[1] "removing duplicate PETs"
Updated a year ago1
Error in data.frame(chr1 = rep(chrom, curlength), start1 = start1[1:curlength], : arguments imply differing number of rows: 0, 1 Calls: makecombos -> data.frame
Updated a year ago2
Error in library("mango") : there is no package called 'mango'
Closed 2 years ago
is mango can be used to HIC data?
Updated 3 years ago
Is there any solution for multi threads now?
Updated 3 years ago
hic (hi-chip) data loop calling with mango
Updated 5 years ago6
MACS2 Failing to produce a good amount peaks, causing failure at stage 5
Updated 7 years ago
Error in seq.default
Updated 7 years ago6
Handle gzipped FASTQs
Closed 7 years ago2
Fix to distance calculation actually breaks pipeline
Updated 8 years ago1
how can mango build bedpe according to line-by-line matching from sam files of uniquely mapped reads
Closed 8 years ago1
Bowtie2?
Updated 8 years ago1
Mango fails at Stage 4 - bedtools merge not accepting piped unspecified stdin
Updated 8 years ago1
numberlinkers argument not passed
Closed 8 years ago3
Inconsistency between code and documentation
Closed 8 years ago1
Calls: makecombos -> data.frame error
Closed 8 years ago3
Macs2 shiftsize is depreciated
Updated 8 years ago1
Step 3 fails with no bedpe file written; "Read names of PET ends do not match."
Closed 9 years ago5
Getting error in stage 5 of pipeline in smooth.spline function.
Updated 9 years ago7
Nothing is written on the peaksfileslop
Closed 9 years ago6
Allow a "--threads" flag for step 2 bowtie?
Closed 9 years ago1
"object gsize not found" in mango.R"
Closed 9 years ago1
implement external sorting to sort large file
Closed 10 years ago
get macs2 installed on OSX 10.9
Closed 10 years ago
implement intersectBed
Closed 10 years ago