dpeerlab / spectra

Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms

dpeerlab/spectra Issues

factor importance and information scores
Updated 3 months ago3
GPU tutorial?
Updated 3 months ago3
Number of cores allocation
Updated 4 months ago1
Specific factors vary based on global.
Updated 5 months ago1
run adata.uns['SPECTRA_overlap'].index, and there are some factors without name?
Updated 6 months ago1
Computing factor importance scores
Updated 6 months ago
The meaning of gene weight?
Updated 7 months ago1
Does Spectra accept processed expression matrix as the input?
Updated 7 months ago1
Running Spectra with mouse data?
Closed 9 months ago1
UnboundLocalError: local variable 'is_global' referenced before assignment
Updated a year ago2
unbound local variable is_global
Updated a year ago1
use_cell_types not implemented in Spectra_gpu
Updated a year ago2
issue with self.rho = nn.ParameterDict(self.rho)
Updated a year ago2
TypeError: SPECTRA_Model.train() got an unexpected keyword argument 'label_factors'
Updated a year ago1
Util function improvements
Closed a year ago1
Unexpected spectra factors and some misc questions
Closed a year ago6
GPU implementation
Updated a year ago16
spc.est_spectra stalls and go to next step after some epochs
Updated a year ago
train() got an unexpected keyword argument 'label_factors'
Closed a year ago2
Example notebook is missing
Closed a year ago2
Annotation format requirement
Closed 2 years ago3
Error whene gene in of geneset is not contained in anndata
Closed 2 years ago6
Error when running spc.est_spectra
Closed 2 years ago5
Key Error for est_spectra
Closed 2 years ago1
TabError: inconsistent use of tabs and spaces in indentation
Closed a year ago2
Monitoring training
Updated a year ago1
tutorial typo
Closed 2 years ago1
dictionary format when no cell type labels in adata
Closed 2 years ago6
Error saving / loading when initialize the model with kappa/ rho etc.
Closed 2 years ago3