Diego A Pacheco Pinedo's repositories
BridgingRegistrations
Bridging registrations to convert between different Drosophila template brains
ca_source_extraction_int
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
CMTK_matlab_wrapper
Matlab functions to interphase with CMTK toolbox
ColorMIP_Mask_Search
ColorMIP_Mask_Search plugin for Fiji
computer_cluster_interface
Scripts to interface with computer clusters
DrosAdultBRAINdomains
Drosophila Adult Brain Domains
DrosAdultHalfBRAINdomains
Domains from confocal serial section image data used for the study "A Systematic Nomenclature for the Insect Brain" Kei Ito, et al.
DrosAdultVNSdomains
Drosophila Adult Ventral Nervous System Domains
DrosophilidBridgingRegistrations
Bridging registrations to convert between different Drosophila species template brains
facemap
matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)
FilterResolution
Code for filter resolution paper figure.
Master8_obj_MatLab
Matlab Object to interface with Master8
MeshVol_CPD_Registration
Personal mirror of Andriy Myronenko's Coherent Point Drift library, which my plant registration method uses.
MirrorRegistrations
Mirroring points in various Drosophila melanogaster template brain spaces
MovieSlider
Embeddable Matlab panel for playback, scrolling, and contrast/color map adjustment of 3D movies.
neuronbridger
R client utilities for interacting with the neuronbridge matching service
neuroSummerSchools
List of summer schools in neuroscience and related fields
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
pulseTypeClassifier
pulses in, Pfast & Pslow out
shadedErrorBar
Produce elegant shaded error bars in MATLAB
StackViewer
A MATLAB wrapper of FIJI macros to display many channels per single stack or overlay many single channel stacks
treestoolbox
TREES toolbox