Illumina (Hiseq, MiSeq, GA) Sequencing Instruments Tracking
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lib directory:
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npg:: - web application
npg_tracking:: - general definition
access to genomic references and other reference data
API for extended Illumina rundolder structure
DBIx binding to the tracking database
st::api:: - perl binding to LIMS XML feeds
Monitor:: - monitoring runfolders on staging servers up to the analysis stage
npg_testing:: - supplimentary modules for testing
bin directory:
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perl scripts
cgi-bin directory
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cgi scripts for the web app
scripts
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supplimentary scripts
htdocs directory:
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images and client-side scripts for the web app
data directory:
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templates for the web app and some cron jobs
db config file for the web app
some icons
Apache web server config file
db schema dump
t directory:
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tests
test data
supplimentary scripts and modules for testing