Beast code in Giters

Jun Zhang's starred repositories

rfy_hic2

General version of Hi-C processing pipeline

Language:PerlGPL-3.0200

bam-readcount

Count bases in BAM/CRAM files

Language:CMakeMIT30100

VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered markers.

Language:PythonGPL-3.01200

Prodigal

Prodigal Gene Prediction Software

Language:CGPL-3.043700

nPhase

Ploidy agnostic phasing pipeline and algorithm

Language:PythonGPL-3.04200

merqury

k-mer based assembly evaluation

Language:ShellNOASSERTION28000

RNA-seq-analysis

RNAseq analysis notes from Ming Tang

Language:PythonMIT88700

research-method

论文写作与资料分享

233000

polyRAD

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Language:HTML2700

rTASSEL

R front-end for TASSEL

Language:RApache-2.02800

SVbyEye

Language:RMIT6300

mike

Language:PythonGPL-3.02700

MCScanX

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

Language:CAP CDS22400

UnderstandingDeepLearning-ZH-CN

UnderstandingDeepLearing中文翻译

8300

BAMixChecker

BAMixChecker: A fast and efficient tool for sample matching checkup

Language:Python1200

annotated_deep_learning_paper_implementations

🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

Language:PythonMIT5470600