douglowe / test_cwl_setup_data

CWL Novice tutorial template

CWL Template for the CWL Novice tutorial.

This template contains some of the scripts used in the tutorial. It also contains instructions for installing the bio-cwl-tools libraries.

Before using these scripts you will need to install VSCode, docker, and cwltool. Instructions for installing these are available via their websites, and on the course Setup page.

Usage

This template should be used to create a new git repository - in which you can install the bio-cwl-tools libraries using git submodules. The steps to do this are:

1. Click the Use this template button, and create a new repository as you would usually
   • Before the next step you can, if you wish, copy this repository to a different git service (such as gitlab).
2. Clone the repository locally, using git clone [template address] (the [template address] can be got from the Code button at the top of the page)
3. Follow the instructions in the README-local_biocwltools_submodules.md file for setting up and using local Biobb libraries.