dorbarker / nAWC

Neighbour Adjusted Wallace Coefficient for identifying cluster stability

Neighbour Adjusted Wallace Coefficient (nAWC)

Using the Adjusted Wallace Coefficient to identify regions of population (in)stability.

Prerequisites

install.packages(c("ggplot2", "magrittr", "reshape2", "optparse"),
                   repos="https://cloud.r-project.org/")

Usage

Clusters can be generated from GrapeTree via this clustering script

Rscript nawc.R -i clusters.csv -o results/ -d ,

$ Rscript nawc.R --help
Usage: nawc.R [options]


Options:
	-i FILE, --input=FILE
		Input table of clusters over thresholds

	-o DIR, --outdir=DIR
		Output directory - will be created if it doesn't already exist

	-d CHAR, --delimiter=CHAR
		Delimiter character for input [TAB]

	-h, --help
		Show this help message and exit