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Don Kang (donkang75)

donkang75

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Location:CA, USA

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JGI-Bioinformatics

Don Kang's repositories

MetaQC

MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis

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MetaPCA

MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data

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DeepLearningTutorials

Deep Learning Tutorial notes and code. See the wiki for more info.

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active-learning-workshop

Active Learning Workshop Materials

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arrow

Apache Arrow is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. It also provides computational libraries and zero-copy streaming messaging and interprocess communication. Languages currently supported include C, C++, Java, JavaScript, Python, and Ruby.

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bbx-binning-evaluation-jd

A biobox for CAMI binning evaluation

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biopython

Official git repository for Biopython (converted from CVS)

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bms038_analysis

Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization

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CancerVar

Clinical interpretation of somatic mutations in cancer

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Clustering.jl

Basic functions for clustering data: k-means, dp-means, etc.

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d3

A JavaScript visualization library for HTML and SVG.

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dask

Parallel computing with task scheduling

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ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

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ipython-in-depth

IPython in-depth Tutorial, first presented at PyCon 2012

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kdd2018

Hands-on workshop

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kdd2019

KDD conf

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keras

Theano-based Deep Learning library (convnets, recurrent neural networks, and more).

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MatrixEval2017

Evaluating access and memory usage of different matrix types

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notebooks-extended

RAPIDS Community Notebooks

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pdftk-brew

http://www.pdflabs.com/tools/pdftk-the-pdf-toolkit/

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qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

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shiny

Easy interactive web applications with R

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TENxBenchmarking

Benchmarking R & Bioconductor performance working with large-scale single-cell data

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