doerlbh

DBLab_bp_solver

bp_solver: create protein whole complex blueprint from dimer -- by Baihan Lin with Baker Lab

EdgeRefinement

awesome-rnn

Recurrent Neural Network - A curated list of resources dedicated to RNN

CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

CNMF_E

Constrained Nonnegative Matrix Factorization for microEndoscopic data

CompBio_Modeling

A repository for modeling biological system

Contents

DBLab_ABEGO_solver

ABEGO_solver: use ABEGO to filter out good models -- by Baihan Lin with Baker Lab

DBLab_bp_creator

bp_creator: create WC bp file emuneratively -- by Baihan Lin with Baker Lab

DBLab_bp_wc2dm

wc2dm: create DM bp file from WC bp file -- by Baihan Lin with Baker Lab

DBLab_cmd_scripts

assembly-related scripts that I wrote to facilitate analysis automation, file searching and rearrangements -- by Baihan Lin with Baker Lab

DREAM_PDBiomarker

a repository for Parkinsons Disease Digital Biomarker DREAM Challenge -- by Baihan Lin with Pe'er Lab

edward

A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.

Geno_SNP_18s_OTU

For Metagenomics, 18s OTU study

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

hmmlearn

Costimized Hidden Markov Models in Python, with scikit-learn like API

Indie_ImageGrider

to test out various image processing techniques to produce an integrative image

ISB_GRN

Gene Regulatory Network Modeling

Learn_Python

A repository for storing my Python learning

Mask_RCNN

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

mcarts

OLab_QuantiPatch

Quanti-Patch: a Quantification Method for ODC Patchiness

prob-seq-cli

QianLab_DNA_dynamics

simulate polymer dynamics

QianLab_SPADE_stochastics

SPADE stochastics

Qix

Machine Learning、Deep Learning、PostgreSQL、Distributed System、Node.Js、Golang

RNAi_CME_Dynamics

A repository for cellular dynamics of stochastic gene expression of RNA interference

scTDA

An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data

scVI

A deep generative model for gene expression profiles from single-cell RNA sequencing

YTLab_Matrix_Solver

process mutual information for protein sequences and visualize them via heatmap etc