David Kennedy's repositories
CloudComputeExample
A repo for an example S3 to EC2 container processing with export back to S3 using 'efficient' local job handling.
brainhack-boston.github.io
Brainhack Boston
demo-protocol
an example protocol which serves as default protocol in schema-ui
ds001907-EDU
Fork of the original OpenNeuro dataset, in order to make proper BIDS for the ReproNim/OHBM 2022 Educational course.
ENIGMA-FreeSurfer-protocol
These protocols are for the analysis of subcortical volume, and cortical thickness and surface area data within FreeSurfer ROI's for ENIGMA working groups.
hackathon2021
Website for the 2021 OHBM Hackathon
handbook
Princeton Handbook for Reproducible Neuroimaging
heudiconv-joss-paper
Repository to prepare HeuDiConv paper
HowWouldReproNim
Sphinx test for rendering the "How Would ReproNim Do That?" series of documents
labelbuddy-annotations
Annotations of academic papers. The papers were likely gathered using pubget, and the annotations made with labelbuddy
module-intro
Module i: An Introduction to Reproducible Neuroimaging training module
neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
neurolinks
Links to Neuroscience tools, portals, initiatives, and more!
nidm-local-terms
Created for NIDM document local term definitions
nidm-specs
Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance
NiMARE
Coordinate- and Image-based meta-analysis in Python
ohbm-aperture.github.io
Website for the OHBM Aperture Initiative
ohbm2020-posters
Centralized registry of Jitsi rooms for OHBM 2020 posters.
OHBMEducation-2022
Repo for the OHBM Education 1/2 day course entitled: "How to Write a Re-Executable Publication"
tutorials-and-resources
A list of tutorials and other resources useful to learn open science and neuroimaging