dmgatti

DOQTL

QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)

AttieMetabolomics

Code for the Attie lab metabolite and lipid data

SingleCellRNAseq

ArsenicExposure

bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

carp_test

dmgatti

Config files for my GitHub profile.

do_sanger_variants

Counting SNPs, Indels and Structural Variants in the DO that intersect with genes.

DO_founder_freq

DO_superovulation

Diversity Outbred superovulation

gbrs_snp

Genotyping by RNAseq using SNPs in Transcripts

GBRS_Tutorial

Tutorial for Genotyping by RNA Sequencing (GBRS), which quantifies transcripts via RNASeq and genotypes the samples using SNPs in transcripts.

HS_AT_KO

HS mice with AT knockout

HSNpt_GenPred

HS/Npt genomic prediction for tumor prevalence

MUGA_reference_data

MUGAarrays

Reconstruct annotation files for the MegaMUGA and GigaMUGA arrays

ozone

Exploratory data analysis of ground level ozone data from 1987 to 2014

PFAS

Marine mammal PFAS sampling

precc_hap_reconstr

Haplotype reconstruction in a set of pre-Collaborative Cross mice

qtl2med

Mediation Analysis for qtl2

qtl2tricks

qtl2tricks-1

rna-seq-lesson

A Carpentries-style lesson on RNA-Sequencing

RNA_Sequencing

RNA Sequencing Data Analysis for Beginners

RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

sandpaper-docs

Documentation for The Carpentries Workbench

scikit-image

Image processing in Python

shiny_wkshp

testing_repo

Testing

Tufts_TB

Tufts Tuberculosis Project