Dan Levitas's repositories
AndysBrainBook
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
BayesfMRI
BayesfMRI R package
bids-specification
Brain Imaging Data Structure (BIDS) Specification
bids-validator
Validator for the Brain Imaging Data Structure
bids-website
Website for the Brain Imaging Data Structure standard.
brainlife.hugo
Brainlife Hugo Setup
ciftiTools
ciftiTools R package
Dcm2Bids
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
ezbids
A web service for semi-automated conversion of raw imaging data to BIDS
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
heudiconv
A flexible DICOM converter for organizing brain imaging data into structured directory layouts
IRF_scripts
Collection of scripts for IRF tools
miscellaneous
An assortment of one-off scripts
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
niivue
a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.
nipy
Neuroimaging in Python FMRI analysis package
niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
Psychopy_Scripts
Psychopy scripts from various studies conducted over the past several years
qsiprep
Preprocessing and reconstruction of diffusion MRI
reproin
A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners
rprime
R package for dealing with Eprime txt files
standard
🌟 JavaScript Style Guide, with linter & automatic code fixer
warehouse
Service that allows data warehousing and workfow orchestration