Davis Kuchaka's repositories
ARGprofiler
A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
carbon
:black_heart: Create and share beautiful images of your source code
cgeisolate
CGE isolate pipeline
dorado
A LibTorch Basecaller for Oxford Nanopore Reads
FastMLST
⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
ilri-africa-cdc-training
A suite of pathogen genomics tutorials for the ILRI Genomics platform training programs
MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
plp
This repository is created to facilitate my learning process in the PLP software development journey
TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
labridge
A Django project
learning-javascript
learning part of plp
miniforge
A conda-forge distribution.
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nextflow
A DSL for data-driven computational pipelines
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
write-the
AI-powered Documentation and Test Generation Tool