Jeremy Zucker's repositories
2017-12-18-PNNL
Unix, Python, and Git Software Carpentry @ PNNL December 18-19, 2017
ABC-model-mentos
MENTOS applied to the ABC Model
agilebiocyc
website htdocs
causal_inference_python_code
Python code for part 2 of the book Causal Inference, by Miguel Hernán and James Robins
chess-alpha-zero
Chess reinforcement learning by AlphaGo Zero methods.
CONFOLD2
Improved ab initio protein structure reconstruction
courses
fast.ai Courses
deepmetabolism
DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing
DNCON2
Deep convolutional neural networks for protein contact map prediction
ecolime
Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
enzynet
EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation
explain-git-with-d3
Use D3 to visualize simple git branching operations.
genbank_to_fasta
Converter for Genbank to FASTA files
git-novice
Software Carpentry introduction to Git for novices.
leela-chess
A chess adaption of GCP's Leela Zero
mentos_paper
To integrate with Authorea
nc12cyc-kb
Neurospora NC12 FINAL_GENECALLS_7
pconpy
a python module for generating protein contact maps and distance maps
r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
SchNet
SchNet - a deep learning architecture for quantum chemistry
Tars
A deep generative model library in Theano and Lasagne
Tensorflow-Dataset-Tutorial
Notebook for my medium article about how to use Dataset API in TensorFlow