diptavo

scimilarity

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

xCell

Cell types enrichment analysis

coding_exercise_TCGA_infiltration

coding exercise using TCGA immune infiltration data

Modern-CPP-Programming

Modern C++ Programming Course (C++03/11/14/17/20/23/26)

popcorn-python3

Software for estimating correlation of trait effect sizes across populations

tidySingleCellExperiment

Brings SingleCellExperiment objects to the tidyverse

scPagwas

Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data

FLCNA

Simultaneous CNV Detection And Subclone Clustering With Single Cell DNA Sequencing Data

awesome-single-cell-proteomics

EG2

Evidence for GWAS Genes

gene_features

rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2

RIVER

R package for RIVER (RNA-Informed Variant Effect on Regulation)

LRTq

Identifying effects of rare variants with likelihood ratio test

MACIE

Multi-dimensional Annotation Class Integrative Estimation

Differentiable-Sparse-Subset-Selection

Differentiable Sparse Subset Selection by Norm Penalties

SCORE

SCalable genetic CORrelation Estimator

manhplot

Manhattan++

RapidoPGS

A rapido and lightweight method for PGS computation

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

bimmer

HDL

High-definition likelihood inference of genetic correlations (HDL)

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

phemap

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

gtx

Genetics ToolboX R package

pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

pathweb

awesome-multi-omics

List of software packages for multi-omics analysis

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

hipo

Heritability Informed Power Optimization (HIPO)