Diptavo Dutta (diptavo)

diptavo

Geek Repo

Company:National Institutes of Health

Location:United States

Home Page:https://diptavo.github.io/

Twitter:@Diptavo

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Diptavo Dutta's starred repositories

Modern-CPP-Programming

Modern C++ Programming Course (C++03/11/14/17/20/23/26)

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awesome-multi-omics

List of software packages for multi-omics analysis

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Language:C++License:MITStargazers:609Issues:39Issues:271

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

Language:C++License:NOASSERTIONStargazers:177Issues:10Issues:521

xCell

Cell types enrichment analysis

pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

Language:PythonLicense:MITStargazers:154Issues:12Issues:200

HDL

High-definition likelihood inference of genetic correlations (HDL)

scimilarity

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

Language:PythonLicense:NOASSERTIONStargazers:81Issues:11Issues:10

rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2

coding_exercise_TCGA_infiltration

coding exercise using TCGA immune infiltration data

License:MITStargazers:42Issues:2Issues:0

tidySingleCellExperiment

Brings SingleCellExperiment objects to the tidyverse

gtx

Genetics ToolboX R package

phemap

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

Language:PythonLicense:Apache-2.0Stargazers:28Issues:1Issues:1

scPagwas

Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data

Language:RLicense:NOASSERTIONStargazers:11Issues:0Issues:0

RapidoPGS

A rapido and lightweight method for PGS computation

Language:TeXLicense:BSD-3-ClauseStargazers:10Issues:3Issues:2

RIVER

R package for RIVER (RNA-Informed Variant Effect on Regulation)

MACIE

Multi-dimensional Annotation Class Integrative Estimation

SCORE

SCalable genetic CORrelation Estimator

Language:C++Stargazers:8Issues:0Issues:0

hipo

Heritability Informed Power Optimization (HIPO)

EG2

Evidence for GWAS Genes

Language:RStargazers:4Issues:0Issues:0

LRTq

Identifying effects of rare variants with likelihood ratio test

Language:Jupyter NotebookLicense:MITStargazers:3Issues:0Issues:0

Differentiable-Sparse-Subset-Selection

Differentiable Sparse Subset Selection by Norm Penalties

Language:Jupyter NotebookStargazers:2Issues:1Issues:0

popcorn-python3

Software for estimating correlation of trait effect sizes across populations

Language:PythonStargazers:2Issues:0Issues:0

FLCNA

Simultaneous CNV Detection And Subclone Clustering With Single Cell DNA Sequencing Data

Language:RLicense:GPL-3.0Stargazers:1Issues:0Issues:0
Language:PythonStargazers:1Issues:1Issues:0