diptavo

Modern-CPP-Programming

Modern C++ Programming Course (C++03/11/14/17/20/23/26)

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awesome-multi-omics

List of software packages for multi-omics analysis

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

xCell

Cell types enrichment analysis

pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

HDL

High-definition likelihood inference of genetic correlations (HDL)

scimilarity

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2

coding_exercise_TCGA_infiltration

coding exercise using TCGA immune infiltration data

tidySingleCellExperiment

Brings SingleCellExperiment objects to the tidyverse

gtx

Genetics ToolboX R package

phemap

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

gene_features

manhplot

Manhattan++

scPagwas

Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data

RapidoPGS

A rapido and lightweight method for PGS computation

bimmer

RIVER

R package for RIVER (RNA-Informed Variant Effect on Regulation)

awesome-single-cell-proteomics

MACIE

Multi-dimensional Annotation Class Integrative Estimation

SCORE

SCalable genetic CORrelation Estimator

hipo

Heritability Informed Power Optimization (HIPO)

EG2

Evidence for GWAS Genes

LRTq

Identifying effects of rare variants with likelihood ratio test

Differentiable-Sparse-Subset-Selection

Differentiable Sparse Subset Selection by Norm Penalties

popcorn-python3

Software for estimating correlation of trait effect sizes across populations

FLCNA

Simultaneous CNV Detection And Subclone Clustering With Single Cell DNA Sequencing Data

pathweb