Diptavo Dutta (diptavo)

diptavo

Geek Repo

Company:National Institutes of Health

Location:United States

Home Page:https://diptavo.github.io/

Twitter:@Diptavo

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Diptavo Dutta's starred repositories

scimilarity

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

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xCell

Cell types enrichment analysis

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coding_exercise_TCGA_infiltration

coding exercise using TCGA immune infiltration data

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Modern-CPP-Programming

Modern C++ Programming Course (C++03/11/14/17/20/23/26)

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popcorn-python3

Software for estimating correlation of trait effect sizes across populations

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tidySingleCellExperiment

Brings SingleCellExperiment objects to the tidyverse

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scPagwas

Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data

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FLCNA

Simultaneous CNV Detection And Subclone Clustering With Single Cell DNA Sequencing Data

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EG2

Evidence for GWAS Genes

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rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2

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RIVER

R package for RIVER (RNA-Informed Variant Effect on Regulation)

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LRTq

Identifying effects of rare variants with likelihood ratio test

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MACIE

Multi-dimensional Annotation Class Integrative Estimation

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Differentiable-Sparse-Subset-Selection

Differentiable Sparse Subset Selection by Norm Penalties

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SCORE

SCalable genetic CORrelation Estimator

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manhplot

Manhattan++

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RapidoPGS

A rapido and lightweight method for PGS computation

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vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

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HDL

High-definition likelihood inference of genetic correlations (HDL)

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regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

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phemap

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

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gtx

Genetics ToolboX R package

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pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

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awesome-multi-omics

List of software packages for multi-omics analysis

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awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

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hipo

Heritability Informed Power Optimization (HIPO)

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