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r-source

R Source Code

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mustache.github.com

The {{official}} website

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titratableCRISPRi

code (iPython notebooks) used in analyzing titratable CRISPRi experiments

Language:Jupyter NotebookBSD-3-Clause100

stat_rethinking_2020

Statistical Rethinking Course Winter 2020/2021

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progress

Linux tool to show progress for cp, mv, dd, ... (formerly known as cv)

Language:CGPL-3.0827200

inkscape-hatch-patterns

Patterns for mechanical drawings in Inkscape by HenJan van der Pol

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CSBFinder

A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes

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chrome-tab-modifier

Take control of your tabs

Language:VueMIT53100

CVW_PyHP

Supplementary material for Cornell CVW on "Python for High Performance"

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rethinking

Statistical Rethinking course and book package

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feature-viewer

Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project

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GEOparse

Python library to access Gene Expression Omnibus Database (GEO)

Language:Jupyter NotebookBSD-3-Clause13500

breseq

breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.

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webinars

Training material based on webinar events

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vim-markdown

Markdown Vim Mode

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bwa-mem2

Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.

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uno-phone

Phone Entry through UNO

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Iris

Iris: expanding the palette of microbial phenotypic readouts

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DESeq2

Differential expression of RNA-seq data using the Negative Binomial

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ghostwriter

Text editor for Markdown

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CAFA-sp-targets

CAFA-sp-targets

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rclone

"rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Azure Blob, Azure Files, Yandex Files

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bayesian_first_aid

Inside every classical test there is a Bayesian model trying to get out.

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SEPIO-ontology

Ontology for representing scientific evidence and provenance information

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samtools

This is *NOT* the official repository of samtools.

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xresources

Solarized for X Windows

MIT26800

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

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stringdist

String distance functions for R

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zotero-connectors

Chrome, Firefox, Edge, and Safari extensions for Zotero

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material-components

Documentation and policies for Material Components (all platforms)

Apache-2.0106400