All processed data can be accesed via: Porcessed Data
The file containing all utility functions required to run the scripts can be found here: Utility Functions File
The file containing the gene symbol mapping (mapping all gene symbols to up to date human symbols) required to run the scirpt cna be found here: Gene Symbol Mapping File
The file containing the gene ID to symbol mapping (mapping all Entrez Gene IDs to gene symbols) required to run the scirpt cna be found here: Gene ID to Symbol Mapping File
Number of Resources: 41
Number of Datasets: 116
| Resource | Data Set | Number Of Genes | Number Of Attributes | Number Of Statistically Significant Associations | Prossecing Script | Processed Data |
|---|---|---|---|---|---|---|
| ARCHS4 | Human Cell Line | 23956 | 127 | 608457 | ARCHS4 HCL Script | ARCHS4 HCL Data |
| ARCHS4 | Human Tissue | 23169 | 108 | 500364 | ARCHS4 HT Script | ARCHS4 HT Data |
| ARCHS4 | Human Kinase | 17201 | 498 | 140739 | ARCHS4 HK Script | ARCHS4 HK Data |
| ARCHS4 | Human Transcription Factors | 21917 | 1724 | 470861 | ARCHS4 HTF Script | ARCHS4 HTF Data |
| ARCHS4 | IDG Focused Genes | 18020 | 352 | 95958 | ARCHS4 IDG Script | ARCHS4 IDG Data |
| Achilles | Achilles | 12279 | 216 | 2652264 | Achilles Script | Achilles Data |
| Allen Brain Atlas | Adult Human Brain (RNA-Sequencing) | 18629 | 100 | 92925 | ABA-AHB-RS Script | ABA-AHB-RS Data |
| Allen Brain Atlas | Adult Human Brain (microarray) | 18822 | 414 | 377048 | ABA-AHB-MA Script | ABA-AHB-MA Data |
| Allen Brain Atlas | Aging Human Brain (RNA-Sequencing) Dementia TBI - Tissue | 27858 | 32 | 55716 | ABA-AB-D-TBI Script | ABA-AB-D-TBI Data |
| Allen Brain Atlas | Aging Human Brain (RNA-Sequencing) No Disease | 28206 | 40 | 56388 | ABA-AB-NS Script | ABA-AB-NS Data |
| Allen Brain Atlas | Developing Human Brain (RNA-Sequencing) Age | 22411 | 31 | 44822 | ABA-DB-RS-A Script | ABA-DB-RS-A Data |
| Allen Brain Atlas | Developing Human Brain (RNA-Sequencing) Sample | 22411 | 524 | 587286 | ABA-DB-RS-S Script | ABA-DB-RS-S Data |
| Allen Brain Atlas | Developing Human Brain (RNA-Sequencing) Tissue | 22411 | 26 | 44822 | ABA-DB-RS-T Script | ABA-DB-RS-T Data |
| Allen Brain Atlas | Developing Human Brain (microarray) Age | 16827 | 27 | 27015 | ABA-DB-MA-A Script | ABA-DB-MA-A Data |
| Allen Brain Atlas | Developing Human Brain (microarray) Sample | 16827 | 492 | 413974 | ABA-DB-MA-S Script | ABA-DB-MA-S Data |
| Allen Brain Atlas | Developing Human Brain (microarray) Tissue | 16827 | 26 | 33653 | ABA-DB-MA-T Script | ABA-DB-MA-T Data |
| Allen Brain Atlas | Prenatal Human Brain (microarray) Sample | 19281 | 1198 | 1156878 | ABA-P-S Script | ABA-P-S Data |
| Allen Brain Atlas | Prenatal Human Brain (microarray) Tissue | 19281 | 516 | 501308 | ABA-P-T Script | ABA-P-T Data |
| BioGPS | Cell Line | 12296 | 93 | 228687 | BGPS-CL Script | BGPS-CL Data |
| BioGPS | Tissue | 16290 | 84 | 274099 | BGPS-T Script | BGPS-T Data |
| BioPlanet | ABCA transporters in lipid homeostasis | 9819 | BioPlanet Scripts | BioPlanet Data | ||
| BioPlex | BioPlex | 10824 | 10824 | 111694 | BPLX Script | BPLX Data |
| bgee | Human Sample | 34668 | 1077 | 14983142 | BHS Script | BHS Data |
| bgee | Human Developmental Stage | 34668 | 33 | 603839 | BHDS Script | BHDS Data |
| bgee | Human Anatomical Entity | 34668 | 308 | 4308050 | BHAE Script | BHAE Data |
| bgee | Mouse Sample | 16289 | 10797 | 9141706 | BMS Script | BMS Data |
| bgee | Mouse Developmental Stage | 16289 | 58 | 660778 | BMDS Script | BMDS Data |
| bgee | Mouse Anatomical Entity | 16289 | 3142 | 3163055 | BMAE Script | BMAE Data |
| bgee | Rat Sample | 15799 | 11 | 139136 | BRS Script | BRS Data |
| bgee | Rat Developmental Stage | 15799 | 2 | 22100 | BRDS Script | BRDS Data |
| bgee | Rat Anatomical Entity | 15799 | 10 | 132835 | BRAE Script | BRAE Data |
| CCLE | Cell Line | 17337 | 1036 | 898462 | CCLE Script | CCLE Data |
| Chip Atlas | Chip Atlas | 18539 | 963 | 1361218 | CHPATLS Script | CHPATLS Data |
| ClinVar | ClinVar | 1952 | 2934 | 6663 | ClinVar Script | ClinVar Data |
| CMAP | CMAP | 11801 | 200 | 142745 | CMAP Script | CMAP Data |
| CORUM | CORUM | 3753 | 2752 | 11280 | CORUM Script | CORUM Data |
| CTD | Gene Chemical Interactions | 15676 | 10366 | 160332 | CTD-GCI Script | CTD-GCI Data |
| CTD | Gene Disease Interactions | 17487 | 6384 | 22325153 | CTD-GDI Script | CTD-GDI Data |
| dbGAP | dbGAP | 3616 | 591 | 6088 | dbGAP Script | dbGAP Data |
| Drugbank | Drug Carrier | 61 | 270 | 352 | DRGBNK-DC Script | DRGBNK-DC Data |
| Drugbank | Drug Enzyme | 261 | 869 | 2429 | DRGBNK-DE Script | DRGBNK-DE Data |
| Drugbank | Drug Target | 2532 | 5108 | 13355 | DRGBNK-DT Script | DRGBNK-DT Data |
| Drugbank | Drug Transporter | 154 | 609 | 1784 | DRGBNK-DTRS Script | DRGBNK-DTRS Data |
| DSigDB | Computational Drug Signatures | 18215 | 15819 | 293199 | DSigDB-CDS Script | DSigDB-CDS Data |
| DSigDB | FDA Approved Drugs | 1279 | 1205 | 12571 | DSigDB-FAD Script | DSigDB-FAD Data |
| DSigDB | Kinase Inhibitors | 404 | 1150 | 16240 | DSigDB-KI Script | DSigDB-KI Data |
| DSigDB | Perturbagen Signatures | 10933 | 1163 | 158860 | DSigDB-PS Script | DSigDB-PS Data |
| ENCODE | Transcription Factors | 24656 | 456 | 1530489 | ENCODE-TF Script | ENCODE-TF Data |
| ENCODE | Transcription Factors - Binding Sites | 24656 | 1129 | 2220608 | ENCODE-TF-BS Script | ENCODE-TF-BS Data |
| ESCAPE | ESCAPE | 13514 | 44 | 81427 | ESCAPE Script | ESCAPE Data |
| GAD | Gene-Disease Associations | 14107 | 15522 | 109097 | GAD Script | GAD Data |
| GAD | High Level Gene-Disease Associations | 14120 | 19 | 42691 | HL-GAD Script | HL-GAD Data |
| GDSC | Genomics of Drug Sensitivity in Cancer | 12296 | 727 | 1787693 | GDSC Script | GDSC Data |
| GeneRIF | GeneRIF | 4368 | 125 | 9452 | GeneRIF Script | GeneRIF Data |
| GeneSigDB | GeneSigDB | 18534 | 3508 | 404516 | GeneSigDB Script | GeneSigDB Data |
| GO | Biological Process | 14481 | 11947 | 195513 | GO-BP Script | GO-BP Data |
| GO | Cellular Component | 12400 | 962 | 43458 | GO-CC Script | GO-CC Data |
| GO | Molecular Function | 11739 | 3618 | 48304 | GO-uf Script | GO-uf Data |
| GTEx | Sample | 25577 | 8555 | 10940561 | GTEx Sample Script | GTEx Sample Data |
| GTEx | Tissue | 25577 | 53 | 64221 | GTEx Tissue Script | GTEx Tissue Data |
| Guide to Pharmacology | Chemical Ligands of Receptors | 1577 | 7087 | 13759 | GTP-CLR Tissue Script | GTP-CLR Tissue Data |
| Guide to Pharmacology | Protein Ligands of Receptors | 224 | 196 | 427 | GTP-PLR Script | GTP-PLR Data |
| GWAS Catalog | GWAS Catalog | 6990 | 1978 | 18773 | GWAS Catalog Script | GWAS Catalog Data |
| GWASdb | Disease | 12091 | 225 | 60246 | GWASdb Disease Script | GWASdb Disease Data |
| GWASdb | Phenotype | 12652 | 487 | 70482 | GWASdb Phenotype Script | GWASdb Phenotype Data |
| hu.MAP | hu.MAP | 7669 | 7669 | 126176 | hu.MAP Script | hu.MAP Data |
| HPO | Human Phenotype Ontology | 3644 | 7841 | 415410 | HPO Script | HPO Data |
| Jensen Lab | Compartments | 18535 | 2826 | 829693 | JL-C Script | JL-C Data |
| Jensen Lab | Disease | 13149 | 3679 | 52079 | JL-D Script | JL-D Data |
| Jensen Lab | Tissues | 18565 | 4098 | 434311 | JL-T Script | JL-T Data |
| MGI | Mouse Gene Ontology | 7758 | 8639 | 134408 | MGI Script | MGI Data |
| miRTarBase | miRTarBase | 15575 | 3551 | 417884 | miRTarBase Script | miRTarBase Data |
| Pathway Commons | Protein-Protein Interactions | 16291 | 18511 | 1125042 | PCPPI Script | PCPPI Data |
| Pathway Commons | Pathways | 11164 | 51319 | 1257932 | PCP Script | PCP Data |
| PheWeb | PheWeb | 2716 | PheWeb Scripts | PheWeb Data | ||
| Reactome | Reactome | 10237 | 1887 | 105556 | Reactome Script | Reactome Data |
| Roadmap Epigenomics | Cell and Tissue Expression | 18375 | 57 | 209475 | Roadmap Epigenomics Script | Roadmap Epigenomics Data |
| TargetScanHuman | TargetScanHuman | 18028 | 2318 | 5898446 | TargetScanHuman Script | TargetScanHuman Data |
| TCGA | Adrenocortical Carcinoma | 18423 | 79 | 72970 | TCGA-ACC Script | TCGA-ACC Data |
| TCGA | Bladder Urothelial Carcinoma | 18549 | 430 | 398197 | TCGA-BLCA Script | TCGA-BLCA Data |
| TCGA | Brain Lower Grade Glioma | 18480 | 530 | 489769 | TCGA-LGG Script | TCGA-LGG Data |
| TCGA | Breast Invasive Carcinoma | 18511 | 1215 | 1124480 | TCGA-BRCA Script | TCGA-BRCA Data |
| TCGA | Cervical squamous cell carcinoma and endocervical adenocarcinoma | 18478 | 309 | 284538 | TCGA-CESC Script | TCGA-CESC Data |
| TCGA | Cholangiocarcinoma | 18589 | 45 | 41743 | TCGA-CHOL Script | TCGA-CHOL Data |
| TCGA | Colon Adenocarcinoma | 18340 | 501 | 459393 | TCGA-COAD Script | TCGA-COAD Data |
| TCGA | Esophageal Carcinoma | 18875 | 198 | 186087 | TCGA-ESCA Script | TCGA-ESCA Data |
| TCGA | Glioblastoma Multiforme | 18471 | 173 | 159910 | TCGA-GBM Script | TCGA-GBM Data |
| TCGA | Head and Neck Squamous Cell Carcinoma | 18648 | 566 | 527943 | TCGA-HNSC Script | TCGA-HNSC Data |
| TCGA | Kidney Chromophobe | 18540 | 91 | 84676 | TCGA-KICH Script | TCGA-KICH Data |
| TCGA | Kidney Renal Clear Cell Carcinoma | 18665 | 606 | 565628 | TCGA-KIRC Script | TCGA-KIRC Data |
| TCGA | Kidney Renal Papillary Cell Carcinoma | 18546 | 323 | 299781 | TCGA-KIRP Script | TCGA-KIRP Data |
| TCGA | Liver Hepatocellular Carcinoma | 18339 | 423 | 387737 | TCGA-LIHC Script | TCGA-LIHC Data |
| TCGA | Lung Adenocarcinoma | 18508 | 577 | 533911 | TCGA-LUAD Script | TCGA-LUAD Data |
| TCGA | Lung Squamous Cell Carcinoma | 18608 | 552 | 513287 | TCGA-LUSC Script | TCGA-LUSC Data |
| TCGA | Lymphoid Neoplasm Diffuse Large B-cell Lymphoma | 18967 | 48 | 42973 | TCGA-DLBC Script | TCGA-DLBC Data |
| TCGA | Mesothelioma | 18545 | 87 | 81072 | TCGA-MESO Script | TCGA-MESO Data |
| TCGA | Ovarian Serous Cystadenocarcinoma | 18621 | 429 | 399505 | TCGA-OV Script | TCGA-OV Data |
| TCGA | Pancreatic Adenocarcinoma | 18493 | 183 | 169642 | TCGA-PAAD Script | TCGA-PAAD Data |
| TCGA | Pheochromocytoma and Paraganglioma | 18370 | 187 | 172133 | TCGA-PCPG Script | TCGA-PCPG Data |
| TCGA | Prostate Adenocarcinoma | 18528 | 550 | 509464 | TCGA-PRAD Script | TCGA-PRAD Data |
| TCGA | Rectum Adenocarcinoma | 18335 | 177 | 162528 | TCGA-READ Script | TCGA-READ Data |
| TCGA | Sarcoma | 18584 | 265 | 245886 | TCGA-SARC Script | TCGA-SARC Data |
| TCGA | Skin Cutaneous Melanoma | 18612 | 473 | 439949 | TCGA-SKCM Script | TCGA-SKCM Data |
| TCGA | Stomach Adenocarcinoma | 18917 | 453 | 428467 | TCGA-STAD Script | TCGA-STAD Data |
| TCGA | Testicular Germ Cell Tumors | 18742 | 156 | 145048 | TCGA-TGCT Script | TCGA-TGCT Data |
| TCGA | Thymoma | 18514 | 122 | 112695 | TCGA-THYM Script | TCGA-THYM Data |
| TCGA | Thyroid Carcinoma | 18371 | 572 | 525419 | TCGA-THCA Script | TCGA-THCA Data |
| TCGA | Uterine Carcinosarcoma | 18821 | 57 | 56384 | TCGA-UCS Script | TCGA-UCS Data |
| TCGA | Uterine Corpus Endometrial Carcinoma | 18689 | 581 | 542785 | TCGA-UCEC Script | TCGA-UCEC Data |
| TCGA | Uveal Melanoma | 18136 | 80 | 73121 | TCGA-UVM Script | TCGA-UVM Data |
| The Human Metabolome Database | HMDB | 5309 | 22128 | 848829 | TCGA-HMDB Script | TCGA-HMDB Data |
| The Human Protein Atlas | Celline (RNA-seq) | 17661 | 56 | 197848 | THPA-CL-RS Script | THPA-CL-RS Data |
| The Human Protein Atlas | Normal Tissue (immunohistochemisty) | 9490 | 108 | 117708 | THPA-NT-I Script | THPA-NT-I Data |
| The Human Protein Atlas | Normal Tissue (RNA-seq) | 18200 | 37 | 134717 | THPA-NT-RS Script | THPA-NT-RS Data |
| UK BioBank | MedicationCategory-Gene Associations | 1212 | 20 | 2338 | UKBioBankGWAS Script | UKBioBankGWAS Data |
| WikiPathways | WikiPathways | 5388 | 372 | 15503 | WikiPathways Script | WikiPathways Data |