dgelsin

mRibo

Program for analyzing microbial ribosome profiling data

Ribosome_profiling_MS

QBB_Puerto_Rico_2016

An introduction to bioinformatics and a tutorial on RNA-seq analysis in halophilic Archaea

2018_Bacterial_Pipeline_riboseq

Ribosome profiling pipeline for bacterial samples created by Fuad Mohammad.

ArcPP

Archaeal Proteome Project

Cenote-Taker

Divergent Mobile Element Genome Annotation Pipeline

SHOxi_sRNA_MS

data and scripts for SHOxi manuscript

2015_macbook_pro

2015_macbook_pro_new

cmdb-bootcamp-homework

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

dgelsin.github.io

grabseqs

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

isb_course_2020

Materials and tutorials for the 2020 ISB Microbiome Course

linuxbrew

:penguin: A fork of Homebrew for Linux

mac-dev-playbook

Basic web and app developer Mac setup in Ansible playbooks.

metaWRAP

A comprehensive pipeline for metagenomic analysis

poretools

a toolkit for working with Oxford nanopore data

Rotation4_Taylor_Lab_Spring2015

Scripts & Natural Selection Data on Human Regulatory Elements

Rotation_Taylor_Lab_Spring_2015

Scripts & Natural Selection Data on Human Regulatory Elements for my Rotation with Dr. James Taylor

scikit-ribo

Accurate estimation and robust modelling of translation dynamics at codon resolution

SnapT

Small ncRNA annotation pipeline for transcriptomics

srna_metatranscriptome_paper

Scripts and data for performing the analysis for the metatranscriptome sRNA discovery manuscript