dflemin3 / approxposterior

A Python package for approximate Bayesian inference and optimization using Gaussian processes

https://dflemin3.github.io/approxposterior/

dflemin3/approxposterior Issues

Unnecessary creation of a new GP object in `findNextPoint`
Updated 3 years ago
Single parameter inference causes ValueError
Closed 3 years ago
Don't use nbsphinx_prompt_width to hide prompts
Closed 4 years ago1
Standardize code formatting
Updated 5 years ago
Add MultiNest for posterior retreival
Updated 5 years ago1
Discarding unimportant parameters
Closed 5 years ago1
Explore approxposterior parallelization paradigm
Closed 5 years ago1
Add a warning for when the GP optimization optGPEveryN > m
Closed 5 years ago1
Parallel approxposterior using python 3.8+ multiprocessing
Updated 5 years ago
Implement Bayesian Optimization
Closed 5 years ago2
conda installation is broke
Closed 5 years ago2
Use latin hypercube sampler to initialize GP optimizations
Closed 5 years ago1
Checking GP predictive accuracy on-the-fly
Updated 5 years ago2
Use other regression algorithms besides the GP for logprobability predictions
Closed 5 years ago1
Multiprocessing is slow: too much overhead spinning up new processes
Closed 5 years ago2
Add bounds, scale to ApproxPosterior object?
Closed 5 years ago1
Can't clone from git@github.com:dflemin3
Closed 5 years ago1
Scaling parameter values to improve GP hyperparameter optimization
Closed 5 years ago1
Cross-Validation to select GP hyperparameters
Closed 5 years ago1
Utility functions for training set initialization
Closed 5 years ago1
Let users set the name of the output files
Closed 5 years ago1
Optimize the GP less
Closed 5 years ago1
Add run_mcmc method
Closed 6 years ago1
refactor burn-in estimation
Closed 6 years ago3
Can approxposterior derive posterior distributions for parameters that aren't initial conditions?
Closed 6 years ago2
-inf likelihood in allowable regions of parameter space
Closed 6 years ago1
user-defined emcee samplers
Closed 6 years ago1
Fitting for white noise
Closed 6 years ago1
Expose GP to user
Closed 6 years ago3
more tests!
Closed 6 years ago
Add support to handle/save blobs
Closed 6 years ago1
user-defined likelihood function example Jupyter notebook
Closed 6 years ago1
Posterior Fitting Test
Closed 6 years ago1
Installation Issues
Closed 6 years ago12
log prior called twice
Closed 6 years ago1
allow args, kwargs in likelihood wrapper functions
Closed 6 years ago1
iburn estimate can fail
Closed 6 years ago2