Dengfeng Gao's repositories
CAME
Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.
CTCF_T-ALL_code
All codes used to generate results and figure that are reported in CTCF project.
EmbExe
EXE development paper analysis code
Meat-like-data
A pipeline for analysis to pgEpiSC differentiation into muscle
mouse_BAT_atlas
A pipeline for analysis to snRNA-seq and bulk RNA-seq data of mouse brown adipocyte tissue
pgEpiSC2Muscle
A pipeline for analysis to pgEpiSC differentiation into muscle cells
pig.iPS.RNAseq-analysis
for pig.iPS.RNAseq analysis pipeline
Python-100-Days
Python - 100天从新手到大师
rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
RiA3
Source code for Kabacoff, R. R in Action (3rd edition). Manning: Boca Raton, FL.
transcriptional-noise
Reproducibility repo accompanying Angelidis et al. "An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics"
velocyto.py
RNA velocity estimation in Python