Devin Drown's repositories
Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
Language:PythonGPL-3.0000
HumanMicrobiome
Course website for Human Microbiome at UAF
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jetson_nanopore_sequencing
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
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microViz
R package for microbiome data visualization. Uses phyloseq, vegan and tidyverse. See website link for docs with visual examples. Docker image available.
Language:RGPL-3.0000
nanopolish
Signal-level algorithms for MinION data
Nanopore_urine_analysis
https://www.ncbi.nlm.nih.gov/pubmed/27667325