dervinism

minis

'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/currents in whole-cell patch clamp recordings and to estimate the quantal size in the central synapse.

geometricLayout

Matlab functions for Neuronexus probe mapping and processing binary files with electrophysiological recording data

convert2nwbEcephysMat

Matlab functions to convert ecephys recordings and associated behavioural data to Neurodata Without Borders (NWB) file format

dervinism.github.io

A webpage for Martynas Dervinis

GIN-tutorial-Mellor-lab-retreat-22-06-2022

An introductory tutorial to GIN (G-Node Infrastructure) neuroscience data sharing platform at UoB

kdeModalityTest

Matlab kernel density excess mass estimate of data modality

minis-benchmarking

Analysis code for minis benchmarking study

sortingPipeline

Matlab functions for spike-sorting with kilosort 1 and 2 compatible with both Neuronexus and Neuropixels probes

abfUtilities

Python and Matlab functions for saving version 1 Axon Binary Files (ABF)

bristol-neuroscience-data-guide

A guide to managing neuroscience data at the University of Bristol

CellExplorer

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

circStatNP

Non-parametric circular statistics functions for Matlab

commonlib

Common use custom Matlab functions

convert2nwbEcephysPy

Python functions to convert ecephys recordings and associated behavioural data to Neurodata Without Borders (NWB) file format

KilosortWrapper

lfpProcessingFunctions

Matlab functions for processing LFP signal

chronux_2_12v03

Modified chronux Matlab package (http://chronux.org/)

convert2nwbIcephysMat

Matlab functions to convert intracellular electrophysiology data to Neurodata Without Borders (NWB) file format.

convert2nwbIcephysPy

Python functions to convert intracellular electrophysiology data to Neurodata Without Borders (NWB) file format.

convert2nwbOphysMat

Matlab functions to convert calcium imaging data and associated intracellular electrophysiology data to Neurodata Without Borders (NWB) file format

convert2nwbOphysPy

Python functions to convert calcium imaging data and associated intracellular electrophysiology data to Neurodata Without Borders (NWB) file format

ms-preliminary-code

Top level scripts used to analyse medial septum (MS) preliminary recordings. The code is not intended for public use because it is not well documented and relies on many other dependencies. If you want to use it, get in touch.

petersen-lab-book

Petersen Lab Book github site repository

petersen-lab-matlab

Matlab code for the PetersenLab at UCPH

phy-plugins

Plugins to extend Phy

pupcam

Matlab-based pupil camera GUI

syncNeuropixels

Matlab functions for synchronising dual Neuropixels recording data

thalamocortical1

Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 1

thalamocortical2

Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 2

UnitMatch

Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days. This is code is modified to run on data that is similar to the one in the ms-preliminary dataset